Package: pubmedR 1.0.2.9000

pubmedR: Gathering Metadata About Publications, Grants, Clinical Trials from 'PubMed' Database

A set of tools to extract bibliographic content from 'PubMed' database using 'NCBI' REST API <https://www.ncbi.nlm.nih.gov/home/develop/api/>. It includes functions to search, download, and convert 'PubMed' bibliographic records into data frames compatible with the 'bibliometrix' package. Features include programmatic query building, batch downloading by PMID, citation enrichment via 'NCBI' E-Link, and robust error handling with automatic retry logic.

Authors:Massimo Aria [aut, cre]

pubmedR_1.0.2.9000.tar.gz
pubmedR_1.0.2.9000.zip(r-4.7)pubmedR_1.0.2.9000.zip(r-4.6)pubmedR_1.0.2.9000.zip(r-4.5)
pubmedR_1.0.2.9000.tgz(r-4.6-any)pubmedR_1.0.2.9000.tgz(r-4.5-any)
pubmedR_1.0.2.9000.tar.gz(r-4.7-any)pubmedR_1.0.2.9000.tar.gz(r-4.6-any)
pubmedR_1.0.2.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pubmedR/json (API)
NEWS

# Install 'pubmedR' in R:
install.packages('pubmedR', repos = c('https://massimoaria.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/massimoaria/pubmedr/issues

On CRAN:

Conda:

8.81 score 46 stars 2 packages 67 scripts 18k downloads 10 exports 10 dependencies

Last updated from:add34a2fbf. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK135
source / vignettesOK213
linux-release-x86_64OK145
macos-release-arm64OK80
macos-oldrel-arm64OK99
windows-develOK96
windows-releaseOK125
windows-oldrelOK114
wasm-releaseOK135

Exports:pmApi2dfpmApiRequestpmCitedBypmCollectpmEnrichCitationspmExtractReferencespmFetchByIdpmQueryBuildpmQueryTotalCountpmReferences

Dependencies:askpasscurlhttrjsonlitemimeopensslR6rentrezsysXML

pubmedR

Rendered fromA_Brief_Example.Rmdusingknitr::rmarkdownon Jun 04 2026.

Last update: 2026-04-15
Started: 2020-03-07