{
  "_id": "6a2121f2cd65a98ecbd1f6c7",
  "Package": "pubmedR",
  "Title": "Gathering Metadata About Publications, Grants, Clinical Trials\nfrom 'PubMed' Database",
  "Version": "1.0.2.9000",
  "Authors@R": "person(given = \"Massimo\",\nfamily = \"Aria\",\nrole = c(\"aut\", \"cre\"),\nemail = \"massimo.aria@gmail.com\",\ncomment = c(ORCID = \"0000-0002-8517-9411\"))",
  "Description": "A set of tools to extract bibliographic content from\n'PubMed' database using 'NCBI' REST API\n<https://www.ncbi.nlm.nih.gov/home/develop/api/>. It includes\nfunctions to search, download, and convert 'PubMed'\nbibliographic records into data frames compatible with the\n'bibliometrix' package. Features include programmatic query\nbuilding, batch downloading by PMID, citation enrichment via\n'NCBI' E-Link, and robust error handling with automatic retry\nlogic.",
  "License": "GPL-3",
  "URL": "https://github.com/massimoaria/pubmedR",
  "BugReports": "https://github.com/massimoaria/pubmedR/issues",
  "Encoding": "UTF-8",
  "Config/testthat/edition": "3",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libxml2-dev libssl-dev",
  "Repository": "https://massimoaria.r-universe.dev",
  "Date/Publication": "2026-05-05 08:21:33 UTC",
  "RemoteUrl": "https://github.com/massimoaria/pubmedr",
  "RemoteRef": "HEAD",
  "RemoteSha": "add34a2fbf21f1a344a228e2f3a759f54e23bb44",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 06:54:54 UTC",
    "User": "root"
  },
  "Author": "Massimo Aria [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-8517-9411>)",
  "Maintainer": "Massimo Aria <massimo.aria@gmail.com>",
  "MD5sum": "a2bae9537ca168a10d0f272e355a122d",
  "_user": "massimoaria",
  "_type": "src",
  "_file": "pubmedR_1.0.2.9000.tar.gz",
  "_fileid": "e470f2e5a0bb6b25af4a2c1742a91357545ea0519c039bdf220e77a9cc2f2598",
  "_filesize": 179915,
  "_sha256": "e470f2e5a0bb6b25af4a2c1742a91357545ea0519c039bdf220e77a9cc2f2598",
  "_created": "2026-06-04T06:54:54.000Z",
  "_published": "2026-06-04T06:57:54.564Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79465868932,
      "time": 135,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7404981934"
    },
    {
      "job": 79465868956,
      "time": 145,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7404984567"
    },
    {
      "job": 79465868940,
      "time": 99,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7404972377"
    },
    {
      "job": 79465868941,
      "time": 80,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7404967714"
    },
    {
      "job": 79465403089,
      "time": 213,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7404947469"
    },
    {
      "job": 79465868939,
      "time": 135,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7404981880"
    },
    {
      "job": 79465868950,
      "time": 96,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7404972943"
    },
    {
      "job": 79465868953,
      "time": 114,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7404975916"
    },
    {
      "job": 79465868943,
      "time": 125,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7404979225"
    }
  ],
  "_buildurl": "https://github.com/r-universe/massimoaria/actions/runs/26935868511",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/massimoaria/pubmedr",
  "_commit": {
    "id": "add34a2fbf21f1a344a228e2f3a759f54e23bb44",
    "author": "Massimo Aria <16023543+massimoaria@users.noreply.github.com>",
    "committer": "Massimo Aria <16023543+massimoaria@users.noreply.github.com>",
    "message": "Increment version number to 1.0.2.9000\n",
    "time": 1777969293
  },
  "_maintainer": {
    "name": "Massimo Aria",
    "email": "massimo.aria@gmail.com",
    "login": "massimoaria",
    "description": "Massimo Aria is a full professor in Statistics for Social Sciences at the Department of Economics and Statistics of the University of Naples Federico II",
    "uuid": 16023543,
    "orcid": "0000-0002-8517-9411"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "rentrez",
      "role": "Imports"
    },
    {
      "package": "XML",
      "role": "Imports"
    },
    {
      "package": "bibliometrix",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    }
  ],
  "_owner": "massimoaria",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [
    {
      "week": "2026-15",
      "n": 5
    },
    {
      "week": "2026-16",
      "n": 6
    },
    {
      "week": "2026-17",
      "n": 2
    },
    {
      "week": "2026-19",
      "n": 4
    }
  ],
  "_tags": [
    {
      "name": "v1.0.0",
      "date": "2026-04-15"
    },
    {
      "name": "v1.0.2",
      "date": "2026-05-04"
    }
  ],
  "_stars": 46,
  "_contributors": [
    {
      "user": "massimoaria",
      "count": 51,
      "uuid": 16023543
    },
    {
      "user": "remlapmot",
      "count": 2,
      "uuid": 3777473
    }
  ],
  "_userbio": {
    "uuid": 16023543,
    "type": "user",
    "name": "Massimo Aria",
    "description": "Massimo Aria is a full professor in Statistics for Social Sciences at the Department of Economics and Statistics of the University of Naples Federico II"
  },
  "_downloads": {
    "count": 17581,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/pubmedR"
  },
  "_devurl": "https://github.com/massimoaria/pubmedr",
  "_searchresults": 67,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/pubmedR.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/massimoaria/pubmedr",
  "_realowner": "massimoaria",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2020-03-20"
    },
    {
      "version": "0.0.2",
      "date": "2020-04-03"
    },
    {
      "version": "0.0.3",
      "date": "2020-07-09"
    },
    {
      "version": "1.0.0",
      "date": "2026-04-15"
    },
    {
      "version": "1.0.2",
      "date": "2026-05-04"
    }
  ],
  "_exports": [
    "pmApi2df",
    "pmApiRequest",
    "pmCitedBy",
    "pmCollect",
    "pmEnrichCitations",
    "pmExtractReferences",
    "pmFetchById",
    "pmQueryBuild",
    "pmQueryTotalCount",
    "pmReferences"
  ],
  "_help": [
    {
      "page": "pmApi2df",
      "title": "Convert xml PubMed bibliographic data into a dataframe",
      "topics": [
        "pmApi2df"
      ]
    },
    {
      "page": "pmApiRequest",
      "title": "Gather bibliographic content from PubMed database using NCBI entrez APIs",
      "topics": [
        "pmApiRequest"
      ]
    },
    {
      "page": "pmCitedBy",
      "title": "Find articles that cite a given PubMed article",
      "topics": [
        "pmCitedBy"
      ]
    },
    {
      "page": "pmCollect",
      "title": "Collect and process PubMed bibliographic data in one step",
      "topics": [
        "pmCollect"
      ]
    },
    {
      "page": "pmEnrichCitations",
      "title": "Enrich a PubMed dataframe with citation data",
      "topics": [
        "pmEnrichCitations"
      ]
    },
    {
      "page": "pmExtractReferences",
      "title": "Extract references from PubMed XML records",
      "topics": [
        "pmExtractReferences"
      ]
    },
    {
      "page": "pmFetchById",
      "title": "Fetch PubMed records by PMID",
      "topics": [
        "pmFetchById"
      ]
    },
    {
      "page": "pmQueryBuild",
      "title": "Build a PubMed search query programmatically",
      "topics": [
        "pmQueryBuild"
      ]
    },
    {
      "page": "pmQueryTotalCount",
      "title": "Count the number of documents returned by a query",
      "topics": [
        "pmQueryTotalCount"
      ]
    },
    {
      "page": "pmReferences",
      "title": "Find references cited by a given PubMed article",
      "topics": [
        "pmReferences"
      ]
    }
  ],
  "_readme": "https://github.com/massimoaria/pubmedr/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "curl",
    "httr",
    "jsonlite",
    "mime",
    "openssl",
    "R6",
    "rentrez",
    "sys",
    "XML"
  ],
  "_vignettes": [
    {
      "source": "A_Brief_Example.Rmd",
      "filename": "A_Brief_Example.html",
      "title": "pubmedR",
      "engine": "knitr::rmarkdown",
      "headings": [
        "An R-package to gather bibliographic data from PubMed.",
        "Installation",
        "Load the package",
        "NCBI API key",
        "A brief example",
        "One-step workflow: pmCollect()",
        "Step-by-step workflow",
        "Step 1: Build the query",
        "Step 2: Check the effectiveness of the query",
        "Step 3: Download the collection of document metadata",
        "Step 4: Convert the XML object into a data frame",
        "Fetching records by PMID",
        "Citation enrichment",
        "An overview of the collection using bibliometrix"
      ],
      "created": "2020-03-07 08:00:25",
      "modified": "2026-04-15 06:28:53",
      "commits": 8
    }
  ],
  "_score": 8.813057454360637,
  "_indexed": true,
  "_nocasepkg": "pubmedr",
  "_universes": [
    "massimoaria"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2.9000",
      "date": "2026-06-04T06:57:13.000Z",
      "distro": "noble",
      "commit": "add34a2fbf21f1a344a228e2f3a759f54e23bb44",
      "fileid": "7a4779e51f56481ad68528e52f434111a4a8a54bb3ab85bdba488612c10be532",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/massimoaria/actions/runs/26935868511"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.2.9000",
      "date": "2026-06-04T06:57:20.000Z",
      "distro": "noble",
      "commit": "add34a2fbf21f1a344a228e2f3a759f54e23bb44",
      "fileid": "180474020f6979470fe727f9263917be45c5b0f5ef5fbacb130a2509f57768dc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/massimoaria/actions/runs/26935868511"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2.9000",
      "date": "2026-06-04T06:56:35.000Z",
      "commit": "add34a2fbf21f1a344a228e2f3a759f54e23bb44",
      "fileid": "cfc206fc92a3b594435dcfc1043bd262e928a3f52584f203c78c62fcb39b6d0f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/massimoaria/actions/runs/26935868511"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.2.9000",
      "date": "2026-06-04T06:56:19.000Z",
      "commit": "add34a2fbf21f1a344a228e2f3a759f54e23bb44",
      "fileid": "b74565431cfae80a3fc363fcd5d5cf4ad39f54bacf24e6ef344f1ced91e4c097",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/massimoaria/actions/runs/26935868511"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.2.9000",
      "date": "2026-06-04T06:57:24.000Z",
      "commit": "add34a2fbf21f1a344a228e2f3a759f54e23bb44",
      "fileid": "72c55dba1dbaf303c7cfe55b1e097e08648adeb2202eb3f6d30eb898987bb891",
      "status": "success",
      "buildurl": "https://github.com/r-universe/massimoaria/actions/runs/26935868511"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.2.9000",
      "date": "2026-06-04T06:56:27.000Z",
      "commit": "add34a2fbf21f1a344a228e2f3a759f54e23bb44",
      "fileid": "12969c18be61cc3a355b3cfcadd7f39e6c07acae69879a41474c916429d8b67c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/massimoaria/actions/runs/26935868511"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.2.9000",
      "date": "2026-06-04T06:56:39.000Z",
      "commit": "add34a2fbf21f1a344a228e2f3a759f54e23bb44",
      "fileid": "51cbe176d1580c20d9d1d2ce144949aef021a394b826f92f3814cac95e2447fe",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/massimoaria/actions/runs/26935868511"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.2.9000",
      "date": "2026-06-04T06:56:41.000Z",
      "commit": "add34a2fbf21f1a344a228e2f3a759f54e23bb44",
      "fileid": "a10c14972ccea1897bcdbe400d954b894d3d771f8057c6bbb37074ad0b9494e8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/massimoaria/actions/runs/26935868511"
    }
  ]
}