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  "Title": "Gathering Metadata About Publications, Grants, Clinical Trials\nfrom 'PubMed' Database",
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  "Description": "A set of tools to extract bibliographic content from\n'PubMed' database using 'NCBI' REST API\n<https://www.ncbi.nlm.nih.gov/home/develop/api/>. It includes\nfunctions to search, download, and convert 'PubMed'\nbibliographic records into data frames compatible with the\n'bibliometrix' package. Features include programmatic query\nbuilding, batch downloading by PMID, citation enrichment via\n'NCBI' E-Link, and robust error handling with automatic retry\nlogic.",
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  "URL": "https://github.com/massimoaria/pubmedR",
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  "Date/Publication": "2026-05-05 08:21:33 UTC",
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    "pmApiRequest",
    "pmCitedBy",
    "pmCollect",
    "pmEnrichCitations",
    "pmExtractReferences",
    "pmFetchById",
    "pmQueryBuild",
    "pmQueryTotalCount",
    "pmReferences"
  ],
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    {
      "page": "pmApi2df",
      "title": "Convert xml PubMed bibliographic data into a dataframe",
      "topics": [
        "pmApi2df"
      ]
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    {
      "page": "pmApiRequest",
      "title": "Gather bibliographic content from PubMed database using NCBI entrez APIs",
      "topics": [
        "pmApiRequest"
      ]
    },
    {
      "page": "pmCitedBy",
      "title": "Find articles that cite a given PubMed article",
      "topics": [
        "pmCitedBy"
      ]
    },
    {
      "page": "pmCollect",
      "title": "Collect and process PubMed bibliographic data in one step",
      "topics": [
        "pmCollect"
      ]
    },
    {
      "page": "pmEnrichCitations",
      "title": "Enrich a PubMed dataframe with citation data",
      "topics": [
        "pmEnrichCitations"
      ]
    },
    {
      "page": "pmExtractReferences",
      "title": "Extract references from PubMed XML records",
      "topics": [
        "pmExtractReferences"
      ]
    },
    {
      "page": "pmFetchById",
      "title": "Fetch PubMed records by PMID",
      "topics": [
        "pmFetchById"
      ]
    },
    {
      "page": "pmQueryBuild",
      "title": "Build a PubMed search query programmatically",
      "topics": [
        "pmQueryBuild"
      ]
    },
    {
      "page": "pmQueryTotalCount",
      "title": "Count the number of documents returned by a query",
      "topics": [
        "pmQueryTotalCount"
      ]
    },
    {
      "page": "pmReferences",
      "title": "Find references cited by a given PubMed article",
      "topics": [
        "pmReferences"
      ]
    }
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        "Installation",
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        "Step-by-step workflow",
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        "Step 3: Download the collection of document metadata",
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        "Fetching records by PMID",
        "Citation enrichment",
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      "modified": "2026-04-15 06:28:53",
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